DE API Documentation

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Endpoint Index

• GET /
• GET /admin/apps
• POST /admin/apps
• GET /admin/apps/categories
• POST /admin/apps/categories
• GET /admin/apps/categories/search
• POST /admin/apps/categories/shredder
• DELETE /admin/apps/categories/{category-id}
• PATCH /admin/apps/categories/{category-id}
• POST /admin/apps/shredder
• DELETE /admin/apps/{app-id}
• PATCH /admin/apps/{app-id}
• DELETE /admin/apps/{app-id}/comments/{comment-id}
• PATCH /admin/apps/{app-id}/comments/{comment-id}
• PATCH /admin/apps/{app-id}/documentation
• POST /admin/apps/{app-id}/documentation
• GET /admin/apps/{app-id}/metadata
• POST /admin/apps/{app-id}/metadata
• PUT /admin/apps/{app-id}/metadata
• GET /admin/config
• DELETE /admin/filesystem/entry/{entry-id}/comments/{comment-id}
• PATCH /admin/filesystem/entry/{entry-id}/comments/{comment-id}
• GET /admin/filesystem/metadata/templates
• POST /admin/filesystem/metadata/templates
• DELETE /admin/filesystem/metadata/templates/{template-id}
• POST /admin/filesystem/metadata/templates/{template-id}
• GET /admin/notifications/system
• PUT /admin/notifications/system
• GET /admin/notifications/system-types
• DELETE /admin/notifications/system/:uuid
• GET /admin/notifications/system/:uuid
• POST /admin/notifications/system/:uuid
• GET /admin/ontologies
• POST /admin/ontologies
• DELETE /admin/ontologies/{ontology-version}
• GET /admin/ontologies/{ontology-version}
• POST /admin/ontologies/{ontology-version}
• DELETE /admin/ontologies/{ontology-version}/{root-iri}
• GET /admin/ontologies/{ontology-version}/{root-iri}
• PUT /admin/ontologies/{ontology-version}/{root-iri}
• GET /admin/ontologies/{ontology-version}/{root-iri}/apps
• GET /admin/ontologies/{ontology-version}/{root-iri}/unclassified
• GET /admin/permanent-id-requests
• GET /admin/permanent-id-requests/{request-id}
• POST /admin/permanent-id-requests/{request-id}/ezid
• POST /admin/permanent-id-requests/{request-id}/status
• POST /admin/reference-genomes
• DELETE /admin/reference-genomes/{reference-genome-id}
• PATCH /admin/reference-genomes/{reference-genome-id}
• GET /admin/status
• GET /admin/tool-requests
• GET /admin/tool-requests/{tool-request-id}
• POST /admin/tool-requests/{tool-request-id}/status
• GET /admin/tools
• POST /admin/tools
• DELETE /admin/tools/{tool-id}
• GET /admin/tools/{tool-id}
• PATCH /admin/tools/{tool-id}
• GET /admin/tools/{tool-id}/apps
• POST /admin/tools/{tool-id}/publish
• DELETE /admin/workspaces
• GET /admin/workspaces
• GET /analyses
• POST /analyses
• POST /analyses/shredder
• DELETE /analyses/{analysis-id}
• PATCH /analyses/{analysis-id}
• GET /analyses/{analysis-id}/parameters
• GET /analyses/{analysis-id}/relaunch-info
• GET /analyses/{analysis-id}/steps
• POST /analyses/{analysis-id}/stop
• POST /apps
• POST /apps/:app-id/publish
• POST /apps/arg-preview
• GET /apps/categories
• GET /apps/categories/{group-id}
• GET /apps/elements
• GET /apps/elements/{element-type}
• GET /apps/hierarchies
• GET /apps/hierarchies/{root-iri}
• GET /apps/hierarchies/{root-iri}/apps
• GET /apps/hierarchies/{root-iri}/unclassified
• GET /apps/ids
• POST /apps/permission-lister
• POST /apps/pipelines
• PUT /apps/pipelines/{app-id}
• POST /apps/pipelines/{app-id}/copy
• GET /apps/pipelines/{app-id}/ui
• POST /apps/share
• POST /apps/shredder
• POST /apps/unshare
• DELETE /apps/{app-id}
• GET /apps/{app-id}
• PATCH /apps/{app-id}
• PUT /apps/{app-id}
• GET /apps/{app-id}/comments
• POST /apps/{app-id}/comments
• PATCH /apps/{app-id}/comments/{comment-id}
• PATCH /apps/{app-id}/comments/{comment-id}
• POST /apps/{app-id}/copy
• GET /apps/{app-id}/details
• GET /apps/{app-id}/documentation
• PATCH /apps/{app-id}/documentation
• POST /apps/{app-id}/documentation
• DELETE /apps/{app-id}/favorite
• PUT /apps/{app-id}/favorite
• GET /apps/{app-id}/is-publishable
• GET /apps/{app-id}/metadata
• POST /apps/{app-id}/metadata
• PUT /apps/{app-id}/metadata
• DELETE /apps/{app-id}/rating
• POST /apps/{app-id}/rating
• GET /apps/{app-id}/tasks
• GET /apps/{app-id}/tools
• GET /apps/{app-id}/ui
• GET /apps?search={term}
• GET /coge/genomes
• POST /coge/genomes/load
• POST /coge/genomes/{genome-id}/export-fasta
• GET /collaborator-lists
• POST /collaborator-lists
• DELETE /collaborator-lists/{name}
• GET /collaborator-lists/{name}
• PATCH /collaborator-lists/{name}
• GET /collaborator-lists/{name}/members
• POST /collaborator-lists/{name}/members
• POST /collaborator-lists/{name}/members/deleter
• GET /export-workflow/{analysis-id}
• GET /favorites/filesystem
• PATCH /filesystem/entry/{entry-id}/comments/{comment-id}
• GET /permanent-id-requests
• POST /permanent-id-requests
• GET /permanent-id-requests/status-codes
• GET /permanent-id-requests/types
• GET /permanent-id-requests/{request-id}
• GET /reference-genomes
• GET /reference-genomes/{reference-genome-id}
• GET /secured/bootstrap
• GET /secured/collaborators
• POST /secured/collaborators
• GET /secured/favorites/filesystem
• DELETE /secured/favorites/filesystem/{favorite}
• PUT /secured/favorites/filesystem/{favorite}
• POST /secured/favorites/filter
• GET /secured/fileio/download
• POST /secured/fileio/save
• POST /secured/fileio/saveas
• POST /secured/fileio/upload
• POST /secured/fileio/urlupload
• POST /secured/filesystem/anon-files
• POST /secured/filesystem/delete
• POST /secured/filesystem/delete-contents
• POST /secured/filesystem/delete-tickets
• POST /secured/filesystem/directories
• GET /secured/filesystem/directory
• POST /secured/filesystem/directory/create
• GET /secured/filesystem/display-download
• GET /secured/filesystem/entry/{entry-id}/comments
• POST /secured/filesystem/entry/{entry-id}/comments
• PATCH /secured/filesystem/entry/{entry-id}/comments/{comment-id}
• GET /secured/filesystem/entry/{entry-id}/tags
• PATCH /secured/filesystem/entry/{entry-id}/tags
• POST /secured/filesystem/exists
• GET /secured/filesystem/file/manifest
• GET /secured/filesystem/index
• POST /secured/filesystem/list-tickets
• POST /secured/filesystem/metadata/csv-parser
• GET /secured/filesystem/metadata/template/attr/{attribute-id}
• GET /secured/filesystem/metadata/template/{template-id}
• GET /secured/filesystem/metadata/template/{template-id}/blank-csv
• GET /secured/filesystem/metadata/template/{template-id}/guide-csv
• GET /secured/filesystem/metadata/templates
• POST /secured/filesystem/move
• POST /secured/filesystem/move-contents
• GET /secured/filesystem/paged-directory
• POST /secured/filesystem/path-list-creator
• POST /secured/filesystem/read-chunk
• POST /secured/filesystem/read-csv-chunk
• POST /secured/filesystem/rename
• POST /secured/filesystem/restore
• POST /secured/filesystem/restore-all
• GET /secured/filesystem/root
• POST /secured/filesystem/stat
• POST /secured/filesystem/tickets
• DELETE /secured/filesystem/trash
• POST /secured/filesystem/user-permissions
• GET /secured/filesystem/{data-id}/metadata
• POST /secured/filesystem/{data-id}/metadata
• POST /secured/filesystem/{data-id}/metadata/copy
• POST /secured/filesystem/{data-id}/metadata/save
• POST /secured/filesystem/{data-id}/ore/save
• POST /secured/filetypes/type
• GET /secured/filetypes/type-list
• GET /secured/logout
• GET /secured/notifications/count-messages
• POST /secured/notifications/delete
• DELETE /secured/notifications/delete-all
• GET /secured/notifications/last-ten-messages
• POST /secured/notifications/mark-all-seen
• GET /secured/notifications/messages
• POST /secured/notifications/seen
• POST /secured/notifications/system/delete
• DELETE /secured/notifications/system/delete-all
• POST /secured/notifications/system/mark-all-received
• POST /secured/notifications/system/mark-all-seen
• GET /secured/notifications/system/messages
• GET /secured/notifications/system/new-messages
• POST /secured/notifications/system/received
• POST /secured/notifications/system/seen
• GET /secured/notifications/system/unseen-messages
• GET /secured/notifications/unseen-messages
• GET /secured/oauth/access-code/{api-name}
• DELETE /secured/preferences
• GET /secured/preferences
• POST /secured/preferences
• POST /secured/remove-collaborators
• DELETE /secured/saved-searches
• GET /secured/saved-searches
• POST /secured/saved-searches
• DELETE /secured/sessions
• GET /secured/sessions
• POST /secured/sessions
• POST /secured/share
• GET /secured/tags/suggestions
• POST /secured/tags/user
• DELETE /secured/tags/user/{tag-id}
• PATCH /secured/tags/user/{tag-id}
• POST /secured/unshare
• GET /secured/user-info
• GET /secured/user-search?search={search-string}
• POST /send-notification.
• GET /subjects
• POST /support-email
• GET /teams
• POST /teams
• DELETE /teams/{name}
• GET /teams/{name}
• PATCH /teams/{name}
• POST /teams/{name}/join
• POST /teams/{name}/join-request
• POST /teams/{name}/join-request/{requester}/deny
• POST /teams/{name}/leave
• GET /teams/{name}/members
• POST /teams/{name}/members
• POST /teams/{name}/members/deleter
• GET /teams/{name}/privileges
• POST /teams/{name}/privileges
• GET /tool-requests
• POST /tool-requests
• GET /tool-requests/status-codes
• GET /tools
• POST /tools
• POST /tools/permission-lister
• POST /tools/sharing
• POST /tools/unsharing
• DELETE /tools/{tool-id}
• GET /tools/{tool-id}
• PATCH /tools/{tool-id}
• GET /tools/{tool-id}/apps
• GET /uuid